Dry = Clean?  If only

Dry = Clean? If only

 During a long period of dry weather like we’ve been having, some rivers are cleaner than usual, some are just as dirty.  It depends on which pollutants we’re talking about, and where they’re coming from.  Understanding which is which can help us diagnose problems and prioritize solutions.

The South Skunk River

The South Skunk River upstream of Ioway Creek is at its cleanest (clear and with low E. coli) when the weather has been been dry.  If you’re going to let your kids splash in the water, go here.

Ioway Creek algae

Ioway Creek is less muddy but not any cleaner (high E. coli levels) when the weather has been dry and water levels are low.  Lots of algae this summer, too.

For example, if a stream has high E. coli levels when water levels are low, that’s probably not because of manure carried in agricultural runoff… because when the soils are this dry, what little rain we get soaks in and doesn’t run off.  Under dry conditions, more likely sources are things like cows in the stream or a septic system illegally hooked up to a drainage tile(yes, we’ve seen this happen).  We’ll discuss wastewater treatment plants next time.

The figure below, from the cleanup plan (TMDL) for the Iowa River basin, matches E. coli sources to flow conditions.  These kind of graphs take some explanation, but it’s a really helpful framework for making sense of water quality data.

common sources of bacteria for different flow conditions

The categories on the x-axis are based on percentiles. “High flows” are the top 10% of daily average flows in a given record.  Looking at the last 20 years of data from the USGS gage on the W. Riverside Rd. in Ames (Sleepy Hollow Access), that corresponds to at least 5,453 cubic feet per second of water–probably too fast for safe paddling. “Dry conditions” are the 90th to 60th percentile, corresponding to between 10 and 70 cfs of water–definitely not enough water for paddling. 

When graphing stream flow or E. coli, we often use a logarithmic scale, where each major tick mark is a ten-fold increase. Since flow can range from 0 to 10,000 cfs in a river like the South Skunk, it’s the only way you can read it. 

Boxplots are helpful for seeing summarizing the data. The bottom, middle line, and top of the box represent the 25th, 50th, and 75th percentiles.

In the upper stretch of the South Skunk River, measured at Sleepy Hollow Access, if you take your canoe out during mid-range conditions, it’s more likely than not that E. coli will meet the primary contact recreation standard (the center line on the box, the median, is below the orange line).  It’s even cleaner in dry conditions. Paddlers would benefit from attention to E. coli sources that show up under “wet conditions” such as manure carried in agricultural runoff.

In Ioway Creek at Lincoln Way, E. coli is likely to exceed the secondary contact standard under mid-range conditions, and it’s usually exceeds the primary contact standard across all conditions. Kids play in this creek, and they would benefit from some attention to sources of bacteria that show up under “dry conditions”: this could include inspecting septic systems and working with cattle producers to fence cows out of streams.

Weather Whiplash Returns!

Weather Whiplash Returns!

“If it never rained, we’d have great water quality in Iowa.”

-Jim Richardson

“If it never rained, we’d have great water quality in Iowa,” joked a volunteer at our May 15 water quality snapshot. 15 of us spent the morning testing Ioway Creek and its tributaries in Boone, Hamilton, and Story County and were marveling at the low nitrate levels and crystal clear water at the majority of our sites.

I wish more creeks in central Iowa were like this spot in Boone County. Cows fenced out the creek, a CREP wetland upstream keeping nitrate levels low, orioles and a kingfisher flitting between the trees.

Well, we’ve had some much-needed rain in the week since, and water quality has gone from good to bad. I’ve written before about “weather whiplash” that explains some of the big swings in nitrate over the past decade and here’s an early hint of it. Here’s data from a nitrate sensor in Ioway Creek installed by IIHR-Hydroscience and Engineering. A five-fold increase in nitrate concentrations in just one week! The water has gone back down but the nitrate levels are still above the drinking water standard.

Graph showing a big increase in flow and nitrate levels after a rain storm

And here’s some water samples I collected on Friday May 21. No, that’s not my coffee thermos, that’s some of the world’s best top soil washing down the Skunk River!

Four samples collected May 21, after a 3/4 inch rain

That’s not to blame the weather. It does rain in Iowa and if your farming practices let a plume of topsoil, manure, or fertilizer wash off the field every time that happens, you’re doing it wrong! Some farmers are doing it right (I saw some cover crops this spring near Nevada and lots driving on I-80) but not enough, especially in the Ioway and South Skunk River watersheds.

Water quality monitoring has been top of mind for Prairie Rivers of Iowa lately and I see an challenge and an opportunity. It’s a challenge to interpret data and track our progress when one good rain can cause water quality to go from clear to coffee-colored overnight! There’s an opportunity to be more strategic about how and where we test, so we notice and communicate more eye-opening moments like this one, and hopefully persuade a few more people to protect soil and water.

Update: June has been abnormally dry and Hamilton, Boone and Story County are experience severe drought. Droughts stress is impacting crops and smaller streams are drying up.

Weather whiplash

Weather whiplash

cover crops near Nevada
Nice looking rye cover crop near Nevada, IA
November 2020

A big thank you to farmers who planted cover crops after this challenging year. Cover crops will hold soil and nutrients in place through the winter and early spring. That could be especially important this year.

After a drought, nitrogen that might normally have been taken up by a high-yielding crop or flushed away by rainfall remains in the soil. That leftover nitrogen could be available for next year’s crop, but only if:

A) we have a dry spring, or

B) farmers have made use of practices like cover crops or nitrification inhibitors that prevent nitrogen losses during the fallow season.

A wet year in 2013 following a dry year in 2012 (dark blue) caused nitrate concentrations in many central iowa streams to jump as much as 10 mg/L higher than usual (red). Figure from Van Metre et al. 2008

A drought in 2012 following by a wet spring in 2013 led to nitrate concentrations in excess of 20 mg/L in many rivers in Central Iowa. If we have a wet spring in 2021, we could see this happen again. As one scientific paper put it, “weather whiplash drives deterioration of water quality.”

“Weather whiplash” can also help explain the long-term trends I’ve been seeing in the South Skunk River and its tributaries: a decline in nitrate concentrations from 2005-2012, a big jump in 2013, and another decline over the past 7 years. I’ll walk you through my analysis.

Explaining nitrate concentrations in the South Skunk River

Technical details, feel free to skip: This data was collected by the City of Ames just upstream of wastewater treatment plant. The City has monitored the South Skunk River above and below its wastewater treatment plant almost every week since 2003! Flow is measured continuously at a few miles upstream USGS gage near S. 16th St. I’ve summarized nitrate concentrations and streamflow by season (Jan-Mar, Apr-Jun, Jul-Sep, Oct-Dec). At each step of the way, I apply a linear regression equation and graph the model residuals. Taken together, these three factors explain 59% of the variation. The effects of “weather whiplash” may extend beyond one year, since nitrate from some parts of the field may travel more slowly to streams via groundwater.

In a given quarter, nitrate concentrations in the South Skunk can be up to 10 mg/L higher than the long-term average, or as much as 10 mg/L lower. The following graphs show how much variation is left to explain after correcting for current weather, last year’s weather, and season.

Nitrate in the South Skunk is again declining after a sudden increase in 2013.
Low-flow conditions in 2011-2013 explain unusually low nitrate concentrations.
Wet springs following dry years explain unusually high nitrate concentrations.
Seasonal patterns explain some of the remaining variation.
  1. The lowest nitrate concentrations can be explained by streamflow: when the weather is dry and tiles aren’t flowing, nitrate levels in rivers taper off to the background levels seen in groundwater.
  2. The highest nitrate concentrations can be explained by weather over the previous 12 months: a wet period following a dry period will flush out nitrate that’s accumulated in the soil.
  3. After that, there’s still a seasonal pattern independent of rainfall: nitrogen is most susceptible to loss in spring when soils are bare and microbial activity picks up (April-June) and least susceptible when the maturing crop is using up the available nitrogen (July-Sept).
  4. Can some of the remaining pattern be explained by greater adoption of conservation practices in the watershed in the past 5 years? We hope so, but let’s see what happens next spring!

Too close to call

Too close to call

Disclaimer: This article is not about politics. PRI is a non-partisan organization and does not want to get drawn into a discussion about the election. My intent here is to use an example that’s fresh in our minds to illustrate a challenge for progress tracking in water quality.

Polls are not always accurate. If you didn’t know that before November of 2020, you do now.

There are plenty of parallels with water, so if you’re looking to water quality monitoring to tell you whether or not conservation efforts in your watershed or your state are succeeding, read on.

Bottom line: Short-term water quality trends are usually too close to call.

Quinnipiac University can’t talk to every eligible voter in Florida, so they surveyed 1,657 people the week before the election.

Similarly, it’s not practical to test water quality in a stream 365 days a year, so we often make do with just 12 days a year. There are sensors that can test nitrate or turbidity continuously during the ice-free months, but they’re not cheap.

The voting patterns of those 1,657 people won’t be perfectly representative of Florida. How close do they expect to be? Based on the sample size, Quinnipiac calculates a margin of error: in this case 2.4 percentage points. Talking to more people would reduce the margin of error, but not enough to be worth the cost. In this case, Biden’s lead appears to be outside the margin of error.

Support for candidatePoint estimate95% confidence interval
Biden47%44.6% to 49.4%
Trump42%39.6% to 44.4%

Similarly, the 12 days we test water quality won’t be perfectly representative of the year. How close can we expect to be? We can calculate a margin of error (here, the 95% confidence interval) around our water quality average. Did phosphorus decline in 2019? Too close to call!

Phosphorus in South Skunk RiverPoint estimate95% confidence interval
2019 average0.30 mg/L0.20 mg/L to 0.40 mg/L
2018 average0.36 mg/L0.26 mg/L to 0.46 mg/L

Oops! This poll missed the mark, and by more than the margin of error. Trump actually won Florida with 51.2 percent of the vote. Well, some errors are unavoidable. If sampling error were completely random, we’d expect about 5% of polls to miss by more than the margin of error. That’s what “95% confidence” means. However, according to a new study of 1,400 polls from presidential primaries and general elections, 40% of polls conducted a week before the election missed the mark by that much.

That’s because sampling error isn’t all random. People who ultimately voted one way may have been less likely to appear on the list of phone numbers, less willing to respond, less likely to say what they truly intended, or were more likely to have changed their mind in the final week. And then there’s undecided voters, who don’t always split evenly between candidates. Any of these things can skew the results. Pollsters try to correct for some of these things by weighting various demographic groups, but it doesn’t always work. For “margin of error” to mean what we think it means, according to Kotak and Moore, it would need to be at least two times wider.

Similarly, if monthly samples are not collected on a fixed day of the month, you might underestimate phosphorus or sediment load by planning your week to avoid getting wet, and over-estimate it by going out of your way to capture a sample during a storm. This challenge is well understood in environmental science and there are sampling strategies and equipment to get around it.

What’s not widely appreciated is just how big purely random sampling errors can be. I’ve read the literature and run my own numbers. Even with a 3 years of sampling, you’re lucky to get below a 20 percent margin of error. The problem is more severe for phosphorus and sediment (which move with runoff and vary a lot within a month) than nitrate (which moves with groundwater and drainage water, and is less variable).

Knowing this can help us set realistic expectations. As much as we’d like to know whether conservation efforts on the land are translating into improvements in water quality in the river, we’re not going to be able to tell the difference between a modest improvement and no improvement unless we sample often enough or long enough to bring down the margin of error. Figuring out whether this is worth doing, how to sustain it, and what other things we can learn from water monitoring has been the task of PRI and our partners around Story County working on a ten-year monitoring plan.

A final note. Have some sympathy for pollsters and scientists who are doing their best to base their findings on data, acknowledge the uncertainty in their conclusions, and strive to be less wrong. There are plenty of people on both sides of the aisle who confidently make predictions based on anecdotes, are wrong more often than not, and never admit it. 😉

Fall 2020 Water Quality Snapshot finds sensitive critters

Fall 2020 Water Quality Snapshot finds sensitive critters

Thirteen volunteers braved the cold on October 24 to test water quality in Squaw Creek, the South Skunk River, and their tributaries. For some, this was their 14th Fall Water Quality Snapshot. For others it was their first time doing stream monitoring. What we found defies easy categorization.

Update: The name “Squaw Creek” was officially changed to “Ioway Creek” in February of 2021, to be more respectful to native peoples. Over the next year, expect to see some changes to the names of the Squaw Creek Watershed Coalition and other groups that have formed to protect the creek, as well as maps and signs.

volunteers collecting invertebrates in Squaw Creek with a kick-net
Volunteers Diane Birt, Paul Readhead, Liz Calhoun, and Rick Dietz take turns brushing off rocks to capture bugs in our net. The water was freezing!

By some indicators, water quality in Squaw Creek was good. Since I wasn’t sure how many creeks would be flowing when I planned this event, I added bug collection to the agenda to keep us busy. Excuse me. Benthic macroinvertebrate sampling. We were pleased to find tiny stoneflies and mayflies. They’re good fish food, ask any fly fisherman! Excuse me. An important part of the aquatic food web. These insects also act as a sort of canary in the coal mine. They need water with a lot of dissolved oxygen so will be rare or missing in streams with too much pollution, murky water, or not much in the way of habitat.

Fun fact: while the adult mayfly is notorious for living only 24 hours, the juvenile form (naiad) lives in the stream for several years. If you’re curious what adult mayflies and stoneflies look like, I found some photos from our neighbors in Missouri.

Vials containing tiny mayflies and stoneflies

By some indicators, water quality in Squaw Creek and it’s tributaries was bad. As in, there’s poop in the water. Excuse me, fecal indicator bacteria. This month, E. coli bacteria in Squaw Creek continued to exceed the primary contact recreation standard, and College Creek jumped above secondary contact standard. I wondered if this spike might be due to accumulated… debris… being washed out of the storm sewers and off the landscape by the 1.25 inch rain we received Thursday and Friday, but the lab samples were actually collected on Wednesday Oct 21, so I’m not sure. Anyway, covid-19 is not the only reason I bring hand sanitizer to these events!

By some indicators, water quality was unusually dry this fall. Nitrate was too low to detect at 13 of 16 sites we tested. Under wetter conditions, as we had this spring or last fall, nitrate in these same streams was higher and differences due to landuse or conservation practices in the watershed become more apparent.

SiteWatershedFall 2020Spring 2020Fall 2019
Squaw Creek @ Duff AveRural and urban0105
Bluestem Creek @150th StRural2105
Glacial Creek @ U AveRural (with a constructed wetland)022
College Creek @ UniversityUrban022
Nitrate-N concentrations, in mg/L

Water quality is rarely all good news or all bad news. Citizen science can us a more complete picture.

Thanks to all our intrepid volunteers!